QMCPACK is an open-source, high-performance electronic structure code that implements numerous Quantum Monte Carlo (QMC) algorithms. Its main applications are electronic structure calculations of molecular, periodic 2D, and periodic 3D solid-state systems. Variational Monte Carlo (VMC), diffusion Monte Carlo (DMC), and a number of other advanced QMC algorithms are implemented. By directly solving the Schrodinger equation, QMC methods offer greater accuracy than methods such as density functional theory but at a trade-off of much greater computational expense. Distinct from many other correlated many-body methods, QMC methods are readily applicable to both bulk (periodic) and isolated molecular systems.
QMCPACK is written in C++ and is designed with the modularity afforded by object-oriented programming. It makes extensive use of template metaprogramming to achieve high computational efficiency. Because of the modular architecture, the addition of new wavefunctions, algorithms, and observables is relatively straightforward. For parallelization, QMCPACK uses a fully hybrid (OpenMP,CUDA)/MPI approach to optimize memory usage and to take advantage of the growing number of cores per SMP node or graphical processing units (GPUs) and accelerators. High parallel and computational efficiencies are achievable on the largest supercomputers. Finally, QMCPACK uses standard file formats for input and output in XML and HDF5 to facilitate data exchange.
This manual currently serves as an introduction to the essential features of QMCPACK and as a guide to installing and running it. Over time this manual will be expanded to include a fuller introduction to QMC methods in general and to include more of the specialized features in QMCPACK.
Quickstart and a first QMCPACK calculation¶
In case you are keen to get started, this section describes how to quickly build and run QMCPACK on a standard UNIX or Linux-like system. The autoconfiguring build system usually works without much fuss on these systems. If C++, MPI, BLAS/LAPACK, FFTW, HDF5, and CMake are already installed, QMCPACK can be built and run within five minutes. For supercomputers, cross-compilation systems, and other computer clusters, the build system might require hints on the locations of libraries and which versions to use, typical of any code; see Obtaining, installing, and validating QMCPACK. Installation instructions for common workstations and supercomputers includes complete examples of installations for common workstations and supercomputers that you can reuse.
To build QMCPACK:
Download the latest QMCPACK distribution from http://www.qmcpack.org.
Untar the archive (e.g.,
tar xvf qmcpack_v1.3.tar.gz).
Check the instructions in the README file.
Run CMake in a suitable build directory to configure QMCPACK for your system:
cd qmcpack/build; cmake ..
If CMake is unable to find all needed libraries, see Obtaining, installing, and validating QMCPACK for instructions and specific build instructions for common systems.
make -j 16; use the latter for a faster parallel build on a system using, for example, 16 processes.
The QMCPACK executable is
QMCPACK is distributed with examples illustrating different capabilities. Most of the examples are designed to run quickly with modest resources. We’ll run a short diffusion Monte Carlo calculation of a water molecule:
Go to the appropriate example directory:
- (Optional) Put the QMCPACK binary on your path:
qmcpack simple-H2O.xmlif you followed the step above.
The run will output to the screen and generate a number of files:
$ls H2O* H2O.HF.wfs.xml H2O.s001.scalar.dat H2O.s002.cont.xml H2O.s002.qmc.xml H2O.s002.stat.h5 H2O.s001.qmc.xml H2O.s001.stat.h5 H2O.s002.dmc.dat H2O.s002.scalar.dat
Partially summarized results are in the standard text files with the suffixes scalar.dat and dmc.dat. They are viewable with any standard editor.
If you have Python and matplotlib installed, you can use the analysis utility to produce statistics and plots of the data. See Analyzing QMCPACK data for information on analyzing QMCPACK data.
export PATH=$PATH:location-of-qmcpack/nexus/bin export PYTHONPATH=$PYTHONPATH:location-of-qmcpack/nexus/library qmca H2O.s002.scalar.dat # For statistical analysis of the DMC data qmca -t -q e H2O.s002.scalar.dat # Graphical plot of DMC energy
The last command will produce a graph as per Fig. 1. This shows the average energy of the DMC walkers at each timestep. In a real simulation we would have to check equilibration, convergence with walker population, time step, etc.
Congratulations, you have completed a DMC calculation with QMCPACK!
Support and Contacting the Developers¶
Questions about installing, applying, or extending QMCPACK can be posted on the QMCPACK Google group at https://groups.google.com/forum/#!forum/qmcpack. You may also email any of the developers, but we recommend checking the group first. Particular attention is given to any problem reports.
QMCPACK implements modern Monte Carlo (MC) algorithms, is highly parallel, and is written using very efficient code for high per-CPU or on-node performance. In particular, the code is highly vectorizable, giving high performance on modern central processing units (CPUs) and GPUs. We believe QMCPACK delivers performance either comparable to or better than other QMC codes when similar calculations are run, particularly for the most common QMC methods and for large systems. If you find a calculation where this is not the case, or you simply find performance slower than expected, please post on the Google group or contact one of the developers. These reports are valuable. If your calculation is sufficiently mainstream we will optimize QMCPACK to improve the performance.
Open Source License¶
QMCPACK is distributed under the University of Illinois at Urbana-Champaign/National Center for Supercomputing Applications (UIUC/NCSA) Open Source License.
University of Illinois/NCSA Open Source License Copyright (c) 2003, University of Illinois Board of Trustees. All rights reserved. Developed by: Jeongnim Kim Condensed Matter Physics, National Center for Supercomputing Applications, University of Illinois Materials computation Center, University of Illinois http://www.mcc.uiuc.edu/qmc/ Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the ``Software''), to deal with the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimers. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimers in the documentation and/or other materials provided with the distribution. * Neither the names of the NCSA, the MCC, the University of Illinois, nor the names of its contributors may be used to endorse or promote products derived from this Software without specific prior written permission. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS WITH THE SOFTWARE.
Copyright is generally believed to remain with the authors of the individual sections of code. See the various notations in the source code as well as the code history.
Contributing to QMCPACK¶
QMCPACK is fully open source, and we welcome contributions. If you are planning a development, early discussions are encouraged. Please post on the QMCPACK Google group or contact the developers. We can tell you whether anyone else is working on a similar feature or whether any related work has been done in the past. Credit for your contribution can be obtained, for example, through citation of a paper or by becoming one of the authors on the next version of the standard QMCPACK reference citation.
A guide to developing for QMCPACK, including instructions on how to work with GitHub and make pull requests (contributions) to the main source are listed on the QMCPACK GitHub wiki: https://github.com/QMCPACK/qmcpack/wiki.
Contributions are made under the same license as QMCPACK, the UIUC/NCSA open source license. If this is problematic, please discuss with a developer.
Please note the following guidelines for contributions:
Additions should be fully synchronized with the latest release version and ideally the latest develop branch on github. Merging of code developed on older versions is error prone.
Code should be cleanly formatted, commented, portable, and accessible to other programmers. That is, if you need to use any clever tricks, add a comment to note this, why the trick is needed, how it works, etc. Although we like high performance, ease of maintenance and accessibility are also considerations.
Comment your code. You are not only writing it for the compiler for also for other humans! (We know this is a repeat of the previous point, but it is important enough to repeat.)
Write a brief description of the method, algorithms, and inputs and outputs suitable for inclusion in this manual.
Develop some short tests that exercise the functionality that can be used for validation and for examples. We can help with this and their integration into the test system.
A general outline of the QMCPACK roadmap is given in the following sections. Suggestions for improvements are welcome, particularly those that would facilitate new scientific applications. For example, if an interface to a particular quantum chemical or density functional code would help, this would be given strong consideration.
We will continue to improve the accessibility and usability of QMCPACK through combinations of more convenient input parameters, improved workflow, integration with more quantum chemical and density functional codes, and a wider range of examples.
In terms of methodological development, we expect to significantly increase the range of QMC algorithms in QMCPACK in the near future.
Computationally, we are porting QMCPACK to the next generation of supercomputer systems. The internal changes required to run efficiently on these systems are expected to benefit all platforms due to improved vectorization, cache utilization, and memory performance.
This manual describes the core features of QMCPACK that are required for routine research calculations, i.e., the VMC and DMC methods, how to obtain and optimize trial wavefunctions, and simple observables. Over time this manual will be expanded to include a broader introduction to QMC methods and to describe more features of the code.
Because of its history as a research code, QMCPACK contains a variety of additional QMC methods, trial wavefunction forms, potentials, etc., that, although not critical, might be very useful for specialized calculations or particular material or chemical systems. These “secret features” (every code has these) are not actually secret but simply lack descriptions, example inputs, and tests. You are encouraged to browse and read the source code to find them. New descriptions will be added over time but can also be prioritized and added on request (e.g., if a specialized Jastrow factor would help or a historical Jastrow form is needed for benchmarking).